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PED in 2024: improving the community deposition of structural ensembles for intrinsically disordered proteins

Nucleic Acids Research; Año: 2024 vol. 52 p. 536 - 544

KUMAR, MANJEET; MICHAEL, SUSHAMA; ALVARADO-VALVERDE, JESÚS; ZEKE, ANDRÁS; LAZAR, TAMAS; GLAVINA JULIANA; NAGY-KANTA E; MAC DONAGH J; KALMAN Z; PASCARELLI S; PALOPOLI, N; DOBSON L; SUAREZ CF; VAN ROEY K; KRYSTKOWIAK I; GRIFFIIN JE; NAGPAL A; BHARDWAJ R; DIELLA F; MÉSZÁROS, BÁLINT; DEAN K; DAVEY, N E; PANCSA, RITA; CHEMES L.B.; GIBSON TJ

ELM-the Eukaryotic Linear Motif resource-2024 update

Nucleic Acids Research; Año: 2024 vol. 52 p. 442 - 455

SAMANO SANCHEZ H; GIBSON TOBY J; CHEMES L.B.

Using Linear Motif Database Resources to Identify SH2 Domain Binders

Methods in Molecular Biology; Año: 2023 vol. 2705 p. 153 - 197

CORIA, LORENA M.; SAPOSNIK, LUCAS M.; PUEBLAS CASTRO, CELESTE; CASTRO, ELIANA F.; BRUNO, LAURA A.; STONE, WILLIAM B.; PÉREZ, PAULA S.; DARRIBA, MARIA LAURA; CHEMES, LUCIA B.; ALCAIN, JULIETA; MAZZITELLI, IGNACIO; VARESE, AUGUSTO; SALVATORI, MELINA; AUGUSTE, ALBERT J.; ÁLVAREZ, DIEGO E.; PASQUEVICH, KARINA A.; CASSATARO, JULIANA

A Novel Bacterial Protease Inhibitor Adjuvant in RBD-Based COVID-19 Vaccine Formulations Containing Alum Increases Neutralizing Antibodies, Specific Germinal Center B Cells and Confers Protection Against SARS-CoV-2 Infection in Mice

Frontiers in Immunology; Lugar: Lausanne; Año: 2022 vol. 13

KUMAR, MANJEET; MICHAEL, SUSHAMA; ALVARADO-VALVERDE, JESÚS; MÉSZÁROS, BÁLINT; SÁMANO-SÁNCHEZ, HUGO; ZEKE, ANDRÁS; DOBSON, LASZLO; LAZAR, TAMAS; ÖRD, MIHKEL; NAGPAL, ANURAG; FARAHI, NAZANIN; KÄSER, MELANIE; KRALETI, RAMYA; DAVEY, NORMAN E.; PANCSA, RITA; CHEMES, LUCÍA B; GIBSON, TOBY J.

The Eukaryotic Linear Motif resource: 2022 release

Nucleic acids research; Lugar: Oxford; Año: 2022 vol. 50

QUAGLIA, FEDERICA; MÉSZÁROS, BÁLINT; SALLADINI, EDOARDO; HATOS, ANDRÁS; PANCSA, RITA; CHEMES, LUCÍA B; PAJKOS, MÁTYÁS; LAZAR, TAMAS; PEÑA-DÍAZ, SAMUEL; SANTOS, JAIME; ÁCS, VERONIKA; FARAHI, NAZANIN; FICHÓ, ERZSÉBET; ASPROMONTE, MARIA CRISTINA; BASSOT, CLAUDIO; CHASAPI, ANASTASIA; DAVEY, NORMAN E.; DAVIDOVI?, RADOSLAV; DOBSON, LASZLO; ELOFSSON, ARNE; ERD?S, GÁBOR; GAUDET, PASCALE; GIGLIO, MICHELLE; GLAVINA, JULIANA; ISERTE, JAVIER; IGLESIAS, VALENTÍN; KÁLMÁN, ZSÓFIA; LAMBRUGHI, MATTEO; LEONARDI, EMANUELA; LONGHI, SONIA; MACEDO-RIBEIRO, SANDRA; MAIANI, EMILIANO; MARCHETTI, JULIA; MARINO-BUSLJE, CRISTINA; MÉSZÁROS, ATTILA; MONZON, ALEXANDER MIGUEL; MINERVINI, GIOVANNI; NADENDLA, SUVARNA; NILSSON, JULIET F.; NOVOTNÝ, MARIAN; OUZOUNIS, CHRISTOS A.; PALOPOLI, NICOLÁS; PAPALEO, ELENA; PEREIRA, PEDRO JOSÉ BARBOSA; POZZATI, GABRIELE; PROMPONAS, VASILIS J.; PUJOLS, JORDI; ROCHA, ALMA CAROLINA SANCHEZ; SALAS, MARTIN; SAWICKI, LUCIANA RODRIGUEZ; SCHAD, EVA; SHENOY, ADITI; SZANISZLÓ, TAMÁS; TSIRIGOS, KONSTANTINOS D.; VELJ

DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation

Nucleic acids research; Lugar: Oxford; Año: 2022 vol. 50

GONZÁLEZ-FOUTEL, NICOLÁS S.; GLAVINA, JULIANA; BORCHERDS, WADE; SAFRANCHIK, MATÍAS; BARRERA-VILARMAU, SUSANA; SAGAR, AMIN; ESTAÑA, ALEJANDRO; BAROZET, AMELIE; GARRONE, NICOLÁS AGUSTÍN; FERNANDEZ-BALLESTER, GREGORIO; BLANES-MIRA, CLARA; SANCHEZ, IGNACIO E.; DE PRAT-GAY, GONZALO; CORTES, JUAN; BERNADÓ, PAU; PAPPU, ROHIT V.; HOLEHOUSE, ALEX S.; DAUGHDRILL, GARY W.; CHEMES, LUCIA B

Conformational buffering underlies functional selection in intrinsically disordered protein regions

NATURE STRUCTURAL & MOLECULAR BIOLOGY; Lugar: Londres; Año: 2022

PUTTA, SIVASANKAR; ALVAREZ, LUCIA; LÜDTKE, STEPHAN; SEHR, PETER; MÜLLER, GERD A.; FERNANDEZ, SAMANTHA M.; TRIPATHI, SARVIND; LEWIS, JOE; GIBSON, TOBY J.; CHEMES, LUCIA B.; RUBIN, SETH M.

Structural basis for tunable affinity and specificity of LxCxE-dependent protein interactions with the retinoblastoma protein family

STRUCTURE WITH FOLDING & DESIGN.; Año: 2022

GLAVINA, JULIANA; RODRÍGUEZ DE LA VEGA, RICARDO C.; RISSO, VALERIA A.; LEONETTI, CÉSAR O.; CHEMES, LUCÍA B.; SÁNCHEZ, IGNACIO E.

Host diversification is concurrent with linear motif evolution in a Mastadenovirus hub protein

JOURNAL OF MOLECULAR BIOLOGY; Año: 2022 vol. 434

GLAVINA, JULIANA; PALOPOLI, NICOLAS; CHEMES, LUCÍA BEATRIZ

Evolution of SLiM-mediated hijack functions in intrinsically disordered viral proteins

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LAURA DARRIBA, M.; CASTRO, CELESTE PUEBLAS; CORIA, LORENA M.; BRUNO, LAURA; LAURA CERUTTI, M.; OTERO, LISANDRO H.; CHEMES, LUCÍA B.; RASIA, RODOLFO M.; KLINKE, SEBASTIÁN; CASSATARO, JULIANA; PASQUEVICH, KARINA A.

A disordered region retains the full protease inhibitor activity and the capacity to induce CD8+ T cells in vivo of the oral vaccine adjuvant U-Omp19

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MÉSZÁROS, BÁLINT; SÁMANO-SÁNCHEZ, HUGO; ALVARADO-VALVERDE, JESÚS; ?ALYEVA, JELENA; MARTÍNEZ-PÉREZ, ELIZABETH; ALVES, RENATO; SHIELDS, DENIS C.; KUMAR, MANJEET; RIPPMANN, FRIEDRICH; CHEMES, LUCÍA B.; GIBSON, TOBY J.

Short linear motif candidates in the cell entry system used by SARS-CoV-2 and their potential therapeutic implications

Science Signaling; Año: 2021 vol. 14

LAZAR, TAMAS; MARTÍNEZ-PÉREZ, ELIZABETH; QUAGLIA, FEDERICA; HATOS, ANDRÁS; CHEMES, LUCÍA B.; ISERTE, JAVIER A.; MÉNDEZ, NICOLÁS A.; GARRONE, NICOLÁS A.; SALDAÑO, TADEO E.; MARCHETTI, JULIA; RUEDA, ANA JULIA VELEZ; BERNADÓ, PAU; BLACKLEDGE, MARTIN; CORDEIRO, TIAGO N.; FAGERBERG, ERIC; FORMAN-KAY, JULIE D.; FORNASARI, MARIA S.; GIBSON, TOBY J.; GOMES, GREGORY-NEAL W.; GRADINARU, CLAUDIU C.; HEAD-GORDON, TERESA; JENSEN, MALENE RINGKJØBING; LEMKE, EDWARD A.; LONGHI, SONIA; MARINO-BUSLJE, CRISTINA; MINERVINI, GIOVANNI; MITTAG, TANJA; MONZON, ALEXANDER MIGUEL; PAPPU, ROHIT V.; PARISI, GUSTAVO; RICARD-BLUM, SYLVIE; RUFF, KIERSTEN M.; SALLADINI, EDOARDO; SKEPÖ, MARIE; SVERGUN, DMITRI; VALLET, SYLVAIN D.; VARADI, MIHALY; TOMPA, PETER; TOSATTO, SILVIO C.E.; PIOVESAN, DAMIANO

PED in 2021: A major update of the protein ensemble database for intrinsically disordered proteins

NUCLEIC ACIDS RESEARCH; Año: 2021 vol. 49

NECCI, MARCO; PIOVESAN, DAMIANO; HOQUE, MD TAMJIDUL; WALSH, IAN; IQBAL, SUMAIYA; VENDRUSCOLO, MICHELE; SORMANNI, PIETRO; WANG, CHEN; RAIMONDI, DANIELE; SHARMA, RONESH; ZHOU, YAOQI; LITFIN, THOMAS; GALZITSKAYA, OXANA VALERIANOVNA; LOBANOV, MICHAIL YU.; VRANKEN, WIM; WALLNER, BJÖRN; MIRABELLO, CLAUDIO; MALHIS, NAWAR; DOSZTÁNYI, ZSUZSANNA; ERD?S, GÁBOR; MÉSZÁROS, BÁLINT; GAO, JIANZHAO; WANG, KUI; HU, GANG; WU, ZHONGHUA; SHARMA, ALOK; HANSON, JACK; PALIWAL, KULDIP; CALLEBAUT, ISABELLE; BITARD-FEILDEL, TRISTAN; ORLANDO, GABRIELE; PENG, ZHENLING; XU, JINBO; WANG, SHENG; JONES, DAVID T.; COZZETTO, DOMENICO; MENG, FANCHI; YAN, JING; GSPONER, JÖRG; CHENG, JIANLIN; WU, TIANQI; KURGAN, LUKASZ; PROMPONAS, VASILIS J.; TAMANA, STELLA; MARINO-BUSLJE, CRISTINA; MARTÍNEZ-PÉREZ, ELIZABETH; CHASAPI, ANASTASIA; OUZOUNIS, CHRISTOS; DUNKER, A. KEITH; KAJAVA, ANDREY V.; LECLERCQ, JEREMY Y.; AYKAC-FAS, BURCU; LAMBRUGHI, MATTEO; MAIANI, EMILIANO; PAPALEO, ELENA; CHEMES, LUCIA BEATRIZ; ÁLVAREZ, LUCÍA; GONZÁLEZ-FOUTEL, NICOLÁS S.; IGLE

Critical assessment of protein intrinsic disorder prediction

NATURE METHODS; Año: 2021 vol. 18 p. 472 - 481

KJAERGAARD, MAGNUS; GLAVINA, JULIANA; CHEMES, LUCIA BEATRIZ

Predicting the effect of disordered linkers on effective concentrations and avidity with the “Ceff calculator” app

METHODS IN ENZYMOLOGY.; Año: 2021 vol. 647 p. 145 - 171

COBOS, EVA S.; SÁNCHEZ, IGNACIO E.; CHEMES, LUCÍA B.; MARTINEZ, JOSE C.; MURCIANO-CALLES, JAVIER

A thermodynamic analysis of the binding specificity between four human pdz domains and eight host, viral and designed ligands

Biomolecules; Año: 2021 vol. 11

TABOADA, CARLOS; BRUNETTI, ANDRÉS E.; LYRA, MARIANA L.; FITAK, ROBERT R.; FAIGÓN SOVERNA, ANA; RON, SANTIAGO R.; LAGORIO, MARÍA G.; HADDAD, CÉLIO F. B.; LOPES, NORBERTO P.; JOHNSEN, SÖNKE; FAIVOVICH, JULIÁN; CHEMES, LUCÍA B.; BARI, SARA E.

Multiple origins of green coloration in frogs mediated by a novel biliverdin-binding serpin

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA; Año: 2020

PALOPOLI, N; ISERTE, J A; CHEMES, L B; MARINO-BUSLJE, C; PARISI, G; GIBSON, T J; DAVEY, N E

The articles.ELM resource: simplifying access to protein linear motif literature by annotation, text-mining and classification

Database; Lugar: Oxford; Año: 2020 vol. 2020 p. 1 - 10

ANDRAS HATOS; CHEMES LUCIA; TOSSATTO SILVIO; PIOVESAN DAMIANO

DisProt: intrinsic protein disorder annotation in 2020

NUCLEIC ACIDS RESEARCH; Lugar: Oxford; Año: 2019

KUMAR, MANJEET; GOUW, MARC; MICHAEL, SUSHAMA; SÁMANO-SÁNCHEZ, HUGO; PANCSA, RITA; GLAVINA, JULIANA; DIAKOGIANNI, ATHINA; VALVERDE, JESÚS ALVARADO; BUKIROVA, DAYANA; ?ALY?EVA, JELENA; PALOPOLI, NICOLAS; DAVEY, NORMAN E; CHEMES, LUCÍA B; GIBSON, TOBY J

ELM—the eukaryotic linear motif resource in 2020

NUCLEIC ACIDS RESEARCH; Lugar: Oxford; Año: 2019

SZABO, BEATA; HORVATH, TAMAS; SCHAD, EVA; MURVAI, NIKOLETTA; TANTOS, AGNES; KALMAR, LAJOS; CHEMES, LUCÍA BEATRIZ; HAN, KYOU-HOON; TOMPA, PETER

Intrinsically disordered linkers impart processivity on enzymes by spatial confinement of binding domains

International Journal of Molecular Sciences; Lugar: Basel; Año: 2019 vol. 20

GOUW, MARC; MICHAEL, SUSHAMA; SÁMANO-SÁNCHEZ, HUGO; KUMAR, MANJEET; ZEKE, ANDRÁS; LANG, BENJAMIN; BELY, BENOIT; CHEMES, LUCÍA B; DAVEY, NORMAN E; DENG, ZIQI; DIELLA, FRANCESCA; GÜRTH, CLARA-MARIE; HUBER, ANN-KATHRIN; KLEINSORG, STEFAN; SCHLEGEL, LARA S; PALOPOLI, NICOLÁS; ROEY, KIM V; ALTENBERG, BRIGITTE; REMÉNYI, ATTILA; DINKEL, HOLGER; GIBSON, TOBY J.

The eukaryotic linear motif resource - 2018 update

NUCLEIC ACIDS RESEARCH; Año: 2018 vol. 46 p. 428 - 434

PALOPOLI, NICOLÁS; GONZÁLEZ FOUTEL, NICOLÁS S; GIBSON, TOBY J; CHEMES, LUCÍA B

Short linear motif core and flanking regions modulate retinoblastoma protein binding affinity and specificity

PROTEIN ENGINEERING DESIGN & SELECTION; Año: 2018 vol. 31 p. 69 - 77

MOLINA, IVANA G.; ESPERANTE, SEBASTIAN A.; MARINO-BUSLJE, CRISTINA; CHEMES, LUCÍA B.; DE PRAT-GAY, GONZALO

Cooperative RNA Recognition by a Viral Transcription Antiterminator

JOURNAL OF MOLECULAR BIOLOGY; Año: 2018

POOSAPATI, ANUSHA; GREGORY, EMILY; BORCHERDS, WADE M.; CHEMES, LUCIA B.; DAUGHDRILL, GARY W.

Uncoupling the Folding and Binding of an Intrinsically Disordered Protein

JOURNAL OF MOLECULAR BIOLOGY; Año: 2018 vol. 430 p. 2389 - 2402

GLAVINA, JULIANA; ROMÁN, ERNESTO A.; ESPADA, ROCÍO; DE PRAT-GAY, GONZALO; CHEMES, LUCÍA B.; SÁNCHEZ, IGNACIO E.

Interplay between sequence, structure and linear motifs in the adenovirus E1A hub protein

VIROLOGY; Año: 2018 vol. 525 p. 117 - 131

TABOADA, CARLOS; BRUNETTI, ANDRÉS E.; PEDRON, FEDERICO N.; NETO, FAUSTO CARNEVALE; ESTRIN, DARÍO A.; BARI, SARA E.; CHEMESE, LUCÍA B.; LOPES, NORBERTO PEPORINE; LAGORIO, MARÍA G.; FAIVOVICH, JULIÁN

Naturally occurring fluorescence in frogs

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA; Año: 2017 vol. 114 p. 3672 - 3677

BORCHERDS, WADE; BECKER ANDREAS; CHEN LIHONG; CHEN JIANDONG; CHEMES LUCÍA BEATRIZ; DAUGHDRILL GARY

Optimal Affinity Enhancement by a Conserved Flexible Linker Controls p53 Mimicry in MdmX

BIOPHYSICAL JOURNAL; Lugar: United States; Año: 2017 vol. 112 p. 1 - 5

BORKOSKY, SILVIA S.; CAMPOREALE, GABRIELA; CHEMES, LUCÍA B.; RISSO, MARIKENA; NOVAL, MARÍA GABRIELA; SÁNCHEZ, IGNACIO E.; ALONSO, LEONARDO G.; DE PRAT GAY, GONZALO

Hidden Structural Codes in Protein Intrinsic Disorder

BIOCHEMISTRY; Año: 2017 vol. 56 p. 5560 - 5569

NOVAL, M.G.; ESPERANTE, S.; MOLINA, IG; CHEMES L.B.; DE PRAT-GAY G

Intrinsic Disorder to Order Transitions in the Scaffold Phosphoprotein P from the Respiratory Syncytial Virus RNA Polymerase Complex

BIOCHEMISTRY; Lugar: Washington; Año: 2016 vol. 55 p. 1441 - 1454

PRETEL E; SANCHEZ, IE; FASSOLARI, M.; CHEMES L.B.; DE PRAT-GAY G

Conformational Heterogeneity Determined by Folding and Oligomer Assembly Routes of the Interferon Response Inhibitor NS1 Protein, Unique to Human Respiratory Syncytial Virus

BIOCHEMISTRY; Lugar: Washington; Año: 2015 vol. 54 p. 5136 - 5146

CHEMES, LUCIA B; DE PRAT-GAY, GONZALO; SÁNCHEZ, IGNACIO ENRIQUE

Convergent evolution and mimicry of protein linear motifs in host-pathogen interactions

CURRENT OPINION IN STRUCTURAL BIOLOGY; Lugar: Londres; Año: 2015 vol. 32 p. 91 - 101

DINKEL, H.; VAN ROEY, K.; MICHAEL, S.; DAVEY, N.E.; WEATHERITT, R.J.; BORN, D.; SPECK, T.; KRUGER, D.; GREBNEV, G.; KUBAN, M.; STRUMILLO, M.; UYAR, B.; BUDD, A.; ALTENBERG, B.; SEILER, M.; CHEMES, L.B.; GLAVINA, J.; SÁNCHEZ, I.E.; DIELLA, F.; GIBSON, T.J.

The eukariotic linear motif database ELM: 10 years and counting

NUCLEIC ACIDS RESEARCH; Lugar: Oxford; Año: 2014 vol. 42 p. 259 - 266

CHEMES L.B.; CAMPOREALE G.; SÁNCHEZ, I.E.; DE PART-GAY, G.; ALONSO, L.G.

Cysteine-rich positions outside the structural zinc motif of human papillomavirus e7 provide conformational modulation and suggest functional redox roles

BIOCHEMISTRY; Lugar: Washington; Año: 2014 vol. 56 p. 1680 - 1696

FASSOLARI, M.; CHEMES, L.B.; GALLO, M.; SMAL, C.; SÁNCHEZ, I.E.; DE PRAT-GAY, G.

Minute Time Scale Prolyl Isomerization Governs Antibody Recognition of an Intrinsically Disordered Immunodominant Epitope

JOURNAL OF BIOLOGICAL CHEMISTRY; Lugar: Bethesda, Maryland; Año: 2013 vol. 288 p. 13110 - 13123

CHEMES, L.B.; NOVAL, MG; SANCHEZ, IE; DE PRAT-GAY, G.

Folding of a cyclin box: linking multitarget binding to marginal stability, oligomerization and aggregation of the retinoblastoma tumor suppressor AB pocket domain

JOURNAL OF BIOLOGICAL CHEMISTRY; Lugar: Bethesda, Maryland; Año: 2013 vol. 288 p. 18923 - 18938

NOVAL, MG; GALLO, M.; PERRONE, S.; SALVAY, A; CHEMES, L.B.; DE PRAT-GAY, G.

Conformational dissection of a viral intrinsically disordered domain involved in cellular transformation

PLOS ONE; Lugar: San Francisco; Año: 2013 p. 1 - 14

CHEMES, L.B.; ALONSO, L.G.; NOVAL, M.G.; DE PRAT-GAY, G.

Circular dichroism techniques for the analysis of intrinsically disordered proteins and domains

METHODS IN MOLECULAR BIOLOGY (CLIFTON, N.J.); Lugar: CLIFTON NJ; Año: 2012 vol. 895 p. 387 - 404

CHEMES, L.B.; GLAVINA, J; ALONSO, L.G.; MARINO BUSLJE, C; DE PRAT-GAY, G.; SÁNCHEZ, I.E.

Sequence evolution of the intrinsically disordered and globular domains of a model viral oncoprotein

PLOS ONE; Lugar: San Francisco; Año: 2012 vol. 7 p. 1 - 9

CHEMES, L.B.; GLAVINA, J.; FAIVOVICH, J.; DE PRAT-GAY, G.; SÁNCHEZ, I.E.

Evolution of Linear Motifs within the papillomavirus E7 oncoprotein

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CHEMES, L.B.; SANCHEZ, I.E.; DE PRAT-GAY, G.

Kinetic recognition of the retinoblastoma tumor suppressor by a specific protein target

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ESPERANTE, S.; CHEMES, L.B.; SÁNCHEZ, I.E.; DE PRAT-GAY, G.

The respiratory syncytial virus transcription antiterminator M2-1 is a highly stable, zinc binding tetramer with strong pH dependent dissociation and a monomeric unfolding intermediate

BIOCHEMISTRY; Año: 2011 vol. 50 p. 8529 - 8539

CHEMES, L.B.; SÁNCHEZ, I.E.; SMAL, C.; DE PRAT-GAY, G.

Targeting mechanism of the retinoblastoma tumor suppressor by a prototypical viral oncoprotein: Structural modularity, intrinsic disorder and phosphorylation of HPV E7

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The human papillomavirus E7-E2 interaction in vitro reveals a finely tuned system for modulating available E7 and E2 proteins

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Chaperone Holdase activity of human papillomavirus E7 oncoprotein

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BERENSTEIN, M.; ADRIS, S.; CHEMES, L.; WOLFMAN, C.; MEDINA, J.; BRAVO, A.; CHERNAJOVSKY, Y.; POFHAJCER, O.L.

Combinación del sistema del gen suidida HSVtk/GCV con citoquinas oara el tratamiento de tumores cerebrales

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