Genomic and phylogenetic analysis of hepatitis C virus isolates from argentine patients: a six-year retrospective study.

QUARLERI JF; ROBERTSON BH; MATHET VL; FELD M; ESPÍNOLA L; REQUEIJO MP; MANDÓ O; CARBALLAL G; OUBIÑA JR

JOURNAL OF CLINICAL MICROBIOLOGY

Año: 2000 vol. 38 p. 4560 - 4568

0095-1137

Typing of hepatitis C virus (HCV) isolates from Argentine patients was performed by using different methodologies in a population of 243 patients. HCV subtype was assigned based upon restriction fragment length polymorphism (RFLP). HCV RNA genomes obtained from serum samples were classified as belonging to clade 1 (53.5%), 2 (23. 0%), or 3 (8.6%); 14.8% of samples showed HCV mixed infections, more frequently implying different subtypes within the same clade. In addition to RFLP typing, phylogenetic relatedness among sequences from both 5' untranslated region (n = 50) and nonstructural 5B coding region (n = 15) was established.