Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics, and hypotheses testing

SANCHEZ, RUBÉN; SERRA, FRANÇOIS; TARRAGA, JOAQUÍN; MEDINA, IGNACIO; CARBONELL, JOSE; PULIDO, LUIS; DE MARÍA, ALEJANDRO; CAPELLA-GUTÍERREZ, SALVADOR; HUERTA- CEPAS, JAIME; GABALDON, TONI; DOPAZO, JOAQUIN; DOPAZO HERNAN

NUCLEIC ACIDS RESEARCH

OXFORD UNIV PRESS

Lugar: Oxford; Año: 2011

0305-1048

Phylemon 2.0 is a new release of the suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. It has been designed as a response to the increasing demand of molecular sequence analyses for experts and non-expert users. Phylemon 2.0 has several unique features that differentiates it from other similar web resources: (i) it offers an integrated environment that enables evolutionary analyses, format conversion, file storage and edition of results, (ii) it suggests further analyses, thereby guiding the users through the web server, and (iii) it allows users to design and save phylogenetic pipelines to be used over multiple genes (phylogenomics). Altogether, Phylemon 2.0 integrates a suite of 30 tools covering sequence alignment reconstruction and trimming; tree reconstruction, visualization and manipulation; and evolutionary hypotheses testing.