Microarray Biclustering: A Novel Memetic Approach Based on the PISA Platform

GALLO, CRISTIAN ANDRÉS; CARBALLIDO, JESSICA ANDREA; PONZONI, IGNACIO

LECTURE NOTES IN COMPUTER SCIENCE

Springer Berlin / Heidelberg

Año: 2009 vol. 5483 p. 44 - 55

0302-9743

In this paper, a new memetic approach that integrates a Multi-Objective Evolutionary Algorithm (MOEA) with local search for microarray biclustering is presented. The original features of this proposal are the consideration of opposite regulation and incorporation of a mechanism for tuning the balance between the size and row variance of the biclusters. The approach was developed according to the Platform and Programming Language Independent Interface for Search Algorithms (PISA) framework, thus achieving the possibility of testing and comparing several different memetic MOEAs. The performance of the MOEA strategy based on the SPEA2 performed better, and its resulting biclusters were compared with those obtained by a multi-objective approach recently published. The benchmarks were two datasets corresponding to Saccharomyces cerevisiae and human B-cells Lymphoma. Our proposal achieves a better proportion of coverage of the gene expression data matrix, and it also obtains biclusters with new features that the former existing evolutionary strategies can not detect.