Principles of Single-molecule microscopy for the visualization of transcription factor and chromatin interactions

DIEGO M. PRESMAN; PAAKINAHO, VILLE; GORDON L. HAGER; GOLDSTEIN, IDO

Avernaes

Workshop; Summer School Diabetes; 2016

Danish Diabetes Academy

Genomics Workshop (2 hrs) 20 min. - G. Hager - Characterization of the mammalian cell chromatin landscapeChIP-seq for histone mods and T factor localizationDNase-seq and ATAC-seq for open chromatin and chromatin transitionsT factor footprinting within the open chromatin landscape 10 min. - Q&A 20 min. ? Diego Presman ? SMT principles 20 min Ville Paakinaho, why do some T factors have no footprints? SMT to the rescue 10 min. - Q&A 20 min. - Ido Goldstein - A general approach for identification of T factor footprint changes during metabolic transitions in primary liver tissue 20 min. - wrap-up, final Q&A