INVESTIGADORES
GOLOBOFF Pablo Augusto
congresos y reuniones científicas
Título:
An efficient implementation of IterPCR
Autor/es:
GOLOBOFF, PABLO A.
Lugar:
Riverside, CA
Reunión:
Congreso; XXXI International Meeting of the Willi Hennig Society; 2012
Institución organizadora:
Willi Hennig Society
Resumen:
This paper describes an efficient implementation of triplet-based measures of stability, in the programTNT. The only available implementations of such measures are much slower than the present one, eitherbecause of an inefficient implementation (Phyutility, Thor) or because the stability is evaluated withquartets (RogueNaRok, requiring O(t4), instead of the O(t3) possible for triplets). The method to quicklycalculate triplets is applied to solving IterPCR (Pol and Escapa, 2009). It is shown that, in some cases,IterPCR or other algorithms in the program TNT (e.g. commands prunnelsen, prunmajor, or chkmoves)produce more informative results than analysis with RogueNaRok.
