An apta-aggregation based machine learning assay for rapid quantification of lysozyme through texture parameters

SANJAY M.; GAURAV K.; GONZALEZ PABON MARIA JESUS; FUCHS, JULIO SILVIO; SUSAN R. MIKKELSEN; EDUARDO CORTON

PLOS ONE

PUBLIC LIBRARY SCIENCE

Lugar: San Francisco; Año: 2021 vol. 16 p. 1 - 16

1932-6203

A novel assay technique that involves quantification of lysozyme (Lys) through machine learning is put forward here. This article reports the tendency of the well- documented Ellington group anti-Lys aptamer, to produce aggregates when exposed to Lys. This property of apta-aggregation has been exploited here to develop an assay that quantifies the Lys using texture and area parameters from a photograph of the elliptical aggregate mass through machine learning. Two assay sets were made for the experimental procedure: one with high Lys concentration between 25-100 mM and another with low concentration between 1-20 mM. The high concentration set had a sample volume of 10 micro-L while the low concentration set had a higher sample volume of 100 micro-L, in order to obtain the statistical texture values reliably from the aggregate mass. The platform exhibited an experimental limit of detection of 1 mM and a response time of less than 10 seconds. Further, two potential operating modes for the aptamer were hypothesized for this aggregation property and the more accurate mode among the two was ascertained through bioinformatics studies.