Simultaneous Parameters Identifiability and Estimation of an E. coli Metabolic Network Model

KESE P. F. ALBERTON; ANDRE LUIS ALBERTON; JIMENA DI MAGGIO; VANINA G. ESTRADA; MARIA SOLEDAD DIAZ; ARGIMIRO R. SECCHI

BIOMED RES INT (ex J BIOMED BIOTECHNOL

Hindawi Publishing Corporation

Lugar: New York; Año: 2015 vol. 2015 p. 1 - 21

2314-6133

This work proposes a procedure for simultaneous parameters identifiability and estimation in metabolic networks in order to overcome difficulties associated with lack of experimental data and large number of parameters, a common scenario in themodeling of such systems. As case study, the complex real problem of parameters identifiability of the Escherichia coli K-12 W3110 dynamic model was investigated, composed by 18 differential ordinary equations and 35 kinetic rates, containing 125 parameters. With the procedure, model fit was improved formost of the measured metabolites, achieving 58 parameters estimated, including 5 unknown initial conditions.The results indicate that simultaneous parameters identifiability and estimation approach in metabolic networks is appealing, since model fit to the most of measured metabolites was possible even when important measures of intracellular metabolites and good initial estimates of parameters are not available