INQUIMAE   12526
INSTITUTO DE QUIMICA, FISICA DE LOS MATERIALES, MEDIOAMBIENTE Y ENERGIA
Unidad Ejecutora - UE
congresos y reuniones científicas
Título:
Exploring chemical reactivity of biomolecules using a QM-MM scheme
Autor/es:
D. A. ESTRIN
Lugar:
Cagliari
Reunión:
Simposio; 7th International Theoretical Biophysics Symposium; 2015
Resumen:
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Computational techniques for modeling biomolecules have emerged
during the last decades as an important tool to complement
experimental information. In this context, the investigation of
phenomena which do not involve formation or breaking of chemical
bonds may be achieved by employing classical force fields. However,
dealing with reactive processes requires quantum mechanical based
techniques and in complex environments, such as biomolecules, is an
extremely demanding task. An elegant way to tackle this issue
consists in employing multi level quantum-classical schemes (QM -MM).
We will present in this talk an overview of our group QM-MM
implementation, which employs a Gaussian basis set Density Functional
Theory scheme, coupled to the Amber program [1] as well as
applications to some representative examples:
i) Molecular basis of peroxiredoxin action. This extremelly relevant
protein family detoxifies peroxides by a very efficient thiol
oxidation reaction. We will show results for the reaction mechanism
in a peroxiredoxin from M. Tuberculosis (AhPE), compared to
results for the uncatalyzed reaction in aqueous solution. [2,3]
ii) Protein nitration is a process that may modulate protein function
in oxidative stress conditions. We will show results for the reaction
mechanism in human Mn superoxide dismutase, a case in which nitration
practically abolishes protein function. [4]
References:
[1]
M.A. Nitsche et al,
J. Chem. Theory and Comput. 10,
959
(2014).
[2] A.
Zeida et al, Chem.
Commun.
50,
10070 (2014).
[3]
A. Zeida et al, Chem.
Res. Toxicol.
25,
741 (2012).
[4]
D.M. Moreno et al, Arch.
Biochem. Biophys.,
507,
304 (2011).