PIWI-interacting RNAs are differentially expressed during cardiac differentiation of human pluripotent stem cells

ALEJANDRO DAMIAN LA GRECA; MARÍA AGUSTINA SCARAFIA; MARÍA CLARA HERNÁNDEZ CAÑÁS; NELBA PÉREZ; SHEILA CASTAÑEDA; CAROLINA COLLI; ALAN MIQUEAS MOBBS; NATALIA LUCIA SANTIN VELAZQUE; GABRIEL NEIMAN; XIMENA GARATE; CYNTIA ABAN; ARIEL WAISMAN; LUCIA NATALIA MORO; GUSTAVO EMILIO SEVLEVER; CARLOS LUZZANI; SANTIAGO MIRIUKA

PLOS ONE

PUBLIC LIBRARY SCIENCE

Lugar: San Francisco; Año: 2020

1932-6203

PIWI-interacting RNAs (piRNAs) are a class of non-coding RNAs initially thought to be restricted exclusively to germline cells. In recent years, accumulating evidence has demonstrated that piRNAs are actually expressed in pluripotent, neural, cardiac and even cancer cells. However, controversy remains around the existence and function of somatic piRNAs. Using small RNA-seq samples from H9 pluripotent cells differentiated to mesoderm progenitors and cardiomyocytes we identified the expression of 447 piRNA transcripts, of which 241 were detected in pluripotency, 218 in mesoderm and 171 in cardiac cells. The majority of them originated from the sense strand of protein coding and lncRNAs genes in all stages of differentiation, though no evidences of amplification loop (ping-pong) were found. Genes hosting piRNA transcripts in cardiac samples were related to critical biological processes in the heart, like contraction and cardiac muscle development. Our results indicate that these piRNAs might have a role in fine-tuning the expression of genes involved in differentiation of pluripotent cells to cardiomyocytes.