An efficient implementation of a QM-MM method in

CARLOS F. SANZ-NAVARRO; ROGELI GRIMA; ALBERTO GARCIA; EDGAR A. BEA; ALEJANDRO SOBA; JOSE M. CELA; PABLO ORDEJÓN

THEORETICAL CHEMISTRY ACCOUNTS

SPRINGER

Lugar: Berlin; Año: 2011 vol. 128 p. 825 - 833

1432-881X

We present the major features of a new implementation of a QM-MM method that uses the DFT code Siesta to treat the quantum mechanical subsystem and the AMBER force field to deal with the classical part. The computation of the electrostatic interaction has been completely revamped to treat periodic boundary conditions exactly, using a real-space grid that encompasses the whole system. Additionally, we present a new parallelization of the Siesta grid operations which provides near-perfect load-balancing for all the relevant operations and achieves a much better scalability, which is important for efficient massive QM-MM calculations in which the grid can potentially be very large.Siesta to treat the quantum mechanical subsystem and the AMBER force field to deal with the classical part. The computation of the electrostatic interaction has been completely revamped to treat periodic boundary conditions exactly, using a real-space grid that encompasses the whole system. Additionally, we present a new parallelization of the Siesta grid operations which provides near-perfect load-balancing for all the relevant operations and achieves a much better scalability, which is important for efficient massive QM-MM calculations in which the grid can potentially be very large.Siesta grid operations which provides near-perfect load-balancing for all the relevant operations and achieves a much better scalability, which is important for efficient massive QM-MM calculations in which the grid can potentially be very large.