IBBM   21076
INSTITUTO DE BIOTECNOLOGIA Y BIOLOGIA MOLECULAR
Unidad Ejecutora - UE
congresos y reuniones científicas
Título:
Acinetobacter spp. plasmids, a diverse gene source
Autor/es:
ILEANA SALTO; GONZALO A. TORRES TEJERIZO; DANIEL WIBBERG; ANDREAS SCHLÜTER; MARIANO PISTORIO
Lugar:
Cuatro Ciénegas, Coahuila
Reunión:
Congreso; III Congreso de Bioquímica y Biología Molecular de Bacterias; 2013
Institución organizadora:
Sociedad Mexicana de Bioquímica
Resumen:
Plasmids are present in all
branches of the bacterial tree of life and have been found in all bacterial
communities studied to date. However, only a limited amount of plasmid
sequences data are currently available (1). The degree of gene diversity within the mobile gene
pool or ?mobilome? (2) and their functions, compared with the essential
genes presents in bacterial chromosomes, has encouraged the speculation that
plasmids represent a different genetic source.
With the aim of investigating the
plasmid content of Acinetobacter spp.,
64 isolates were analyzed in their plasmid content to perform a deep sequencing
of the plasmid found. The analysis showed that 89% of the isolates bear at
least one plasmid. After purifying a pool containing all the plasmids, the DNA was
sequence by Illumina MiSeq in a 2x 250 paired-end run. 1,419,341 reads were
obtained, covering a total of 347,374,930 bp, reaching a value of coverage of approximately
650. 19 close circular plasmids could be assembled, that correspond for more
than 300 Kb in total. The sizes of the plasmids and the GC content were very
variable, ranging between 1.9 to 62 kb and 33% to 61%, respectively. The
annotation was done automatically via the GenDB pipeline available at the
CeBiTec (Uni-Bielefeld, Germany) and RAST (http://rast.nmpdr.org/). Genes of
interest, as identified from the sequencing and bioinformatics analysis, are physically
available in the conserved plasmid collection and can be recovered for activity
evaluation. The wide distribution of different types of plasmids found (evaluated
at this time by the replication initiator proteins) in Acinetobacter spp plasmid collection makes the functional and
phenotypic study of plasmids a relevant focus of analysis to understand the
mechanisms of adaptation, and genomes plasticity of microorganisms.